Bibliography

How to cite:

Kerner A, Bouquin S, Portier R, Vignes Lebbe R (2021) The 8 Years of Existence of Xper3: State of the art and future developments of the platform. Biodiversity Information Science and Standards 5: e74250. https://doi.org/10.3897/biss.5.74250

Publications on Xper2 and Xper3 software

  • Kerner, A.; Bouquin, S.; Portier, R.; Vignes Lebbe, R. The 8 Years of Existence of Xper3: State of the Art and Future Developments of the Platform. BISS 2021, 5, e74250. https://doi.org/10.3897/biss.5.74250.
  • Kerner, A.; Vignes Lebbe, R. Multi-Context Knowledge Base Using Calculated Descriptors from Xper3: The Archaeocyaths Knowledge Base Example. BISS 2019, 3, e37083. https://doi.org/10.3897/biss.3.37083.
  • Pellen, F.; Bouquin, S.; Mougenot, I.; Vignes-Lebbe, R. Building an OWL Ontology with Xper3. BISS 2018, 2, e25614. https://doi.org/10.3897/biss.2.25614.
  • Vignes-Lebbe, R.; Bouquin, S.; Kerner, A.; Bourdon, E. Desktop or Remote Knowledge Base Management Systems for Taxonomic Data and Identification Keys: Xper2 and Xper3. TDWGProc 2017, 1, e19911. https://doi.org/10.3897/tdwgproceedings.1.19911.
  • Pinel, A.; Bouquin, S.; Bourdon, E.; Kerner, A.; Vignes-Lebbe, R. Three Years of Xper3 Assessment: Towards Sharing Semantic Taxonomic Content of Identification Keys. TDWGProc 2017, 1, e20382. https://doi.org/10.3897/tdwgproceedings.1.20382.
  • Vignes Lebbe, R.; Chesselet, P.; Thi, M. H. D. Xper3: Nouveaux Outils Pour Le Travail Collaboratif, La Formation et La Transmission Des Connaissances Sur Les Phénotypes Végétaux. In Botanists of the twenty first century: roles, challenges and opportunities : Based on the proceedings of UNESCO International conference, 22 – 25 September 2014, Paris, France = Quels botanistes pour le 21e siècle ? : métiers, enjeux et opportunités : basé sur les actes de la Conférence internationale de l’UNESCO, Septembre 2014, Paris, France; UNESCO: Paris, France, 2016; pp 228–239 https://unesdoc.unesco.org/ark:/48223/pf0000243791.
  • Kerner, A.; Vignes, R. Knowledge Base with XPER3 in Palaeontology: Calculated Descriptors Offer New Functionalities, 2016. https://hal.science/hal-02557368.
  • Ung, V.; Causse, F.; Lebbe, R. V. Xper2: Managing Descriptive Data from Their Collection to e-Monographs. In Tools for identifying biodiversity : progress and problems : proceedings of the international congress, Paris, September 20-22, 2010, Museum national d’histoire naturelle, Grand Amphithéâtre; Universita di Trieste, 2010; p 113.
  • Ung, V.; Dubus, G.; Zaragüeta-Bagils, R.; Vignes-Lebbe, R. Xper²: introducing e-Taxonomy. Bioinformatics 2010, 26, 5; 703‑704. https://doi.org/10.1093/bioinformatics/btp715

Examples of publications on applications created from Xper3 or Xper2

  • Bodin, S.; Beldados, A.; Lulekal, E.; Wondafrash, M.; Angesom, F.; Tarekegn, T.; Neumann, K. A database and interactive identification key for the anatomy of woods of the Ethiopian Afromontane Forest. IAWA Journal published online ahead of print 2024; 1-19. https://doi.org/10.1163/22941932-bja10175
  • Marcon, S.F.; Bruniera, C.P. Interactive key for species of Rudgea Salisb. (Rubiaceae) that occur in Brazil with emphasis on domatia classification. Hoehnea 2024; 51: e1072023. https://doi.org/10.1590/2236-8906e1072023
  • Puech, E.; Thery-Parisot, I.; Orange, F.; Garberi, P.; Bamford, M.K. SACHA: an interactive identification key of Southern African CHArcoals for anthracological research. IAWA Journal 2024; 1–33. https://doi.org/10.1163/22941932-bja10173
  • Rousse, P.; Taddei, A.; Mouttet, R.; Lethmayer, C.; Blümel, S.; Gottsberger, R.A.; Reisenzein, H.; Reynaud, P. Q‐Tephrikey, an interactive tool for the identification of regulated fruit fly pests in the European Union. EPPO Bulletin 2024; 54 (2): 194–203. https://doi.org/10.1111/epp.13025
  • Lagrange, F.; Martínez, C.; Del Rio, C. Seed morphology of the paleotropical tribe Paropsieae (Passifloraceae, Malpighiales), and paleobotanical implications. European Journal of Taxonomy 2024; 943. https://doi.org/10.5852/ejt.2024.943.2583
  • Bucher, M.; Bouteille, É.; Le Cesne, M. Malagasy spittlebugs (Hemiptera: Cercopidae), a taxonomic review of genera from Madagascar. European Journal of Taxonomy 2024; 935: 166–202. https://doi.org/10.5852/ejt.2024.935.2555
  • Sass-Gyarmati, A.; Reeb, C. Identification tools for Bazzania (Lepidoziaceae, Marchantiophyta) from Madagascar: the Xper3 interactive and static keys. Bryophyte Diversity and Evolution 2024; 47 (1): 171–181. https://doi.org/10.11646/bde.47.1.12
  • Diep Thi, M.H.; Gurgand, J.; Pignal, M.; Vignes Lebbe, R. Creation of the route of bamboo, a contribution to net zero by 2050 in Vietnam. JST: Engineering and Technology for Sustainable Development 2024; 34 (1): 43–51. https://doi.org/10.51316/jst.172.etsd.2024.34.1.6
  • Santos Neves, M.S.A.; Motta, M.A.; Maciel-De-Freitas, R.; Da Silva Xavier, A.; Lourenço-De-Oliveira, R.; Silva-Do-Nascimento, T.F. Illustrated identification key to females of the genus Sabethes Robineau-Desvoidy recorded from Brazil (Diptera: Culicidae), in dichotomous and interactive formats, including an updated list of species and new records for the states. Zootaxa 2024; 5406 (2): 253–287. https://doi.org/10.11646/zootaxa.5406.2.3
  • Linchamps, P.; Avery, D.M.; Cornette, R.; Denys, C.; Matthews, T.; Stoetzel, E. Quaternary rodents of South Africa: A companion guide for cranio-dental identification. Plos One 2023; 18 (11): e0289812. https://doi.org/10.1371/journal.pone.0289812
  • Chaul, J.C.M. A revision of the Cretaceous ant genus Zigrasimecia Barden & Grimaldi, 2013 (Hymenoptera: Formicidae: †Zigrasimeciinae). Zootaxa 2023; 5325 (3): 301–341. https://doi.org/10.11646/zootaxa.5325.3.1
  • Pignal, M.; Laudereau, C.; Laudereau, P.-L. Liste annotée des Goodyerinae Klotzsch (Orchidaceae) de Nouvelle-Calédonie avec la description de deux nouvelles espèces. Adansonia 2023; 45 (19). https://doi.org/10.5252/adansonia2023v45a19
  • Schneider, C.; Minor, M.A.; D’Haese, C.A. A new group of species of the genus Megalothorax (Collembola, Neelidae) with Gondwanan distribution, and introducing an open interactive identification key of Megalothorax species. Zootaxa 2023; 5228 (2): 101–121. https://doi.org/10.11646/zootaxa.5228.2.1
  • Gautam, N.; Sidhu, M.C. An alternative key for identifying three prostrate species of the genus Euphorbia. Botanica 2023; 21–27. https://doi.org/10.35513/Botlit.2023.1.3
  • Palomares-Rius, J.E.; León-Ropero, G.; Clavero-Camacho, I.; Archidona-Yuste, A.; Cantalapiedra-Navarrete, C.; Castillo, P. A new interactive web-based polytomous key for species identification of pin nematodes of the genus Paratylenchus Micoletzky, 1922 (Nematoda: Paratylenchinae) with the use of ribosomal and mitochondrial genes. Journal of Zoological Systematics and Evolutionary Research 2022; 6216266. https://doi.org/10.1155/2022/6216266
  • Klopfstein, S.; Broad, G.R.; Urfer, K.; Vårdal, H.; Haraldseide, H. An interactive key to the European genera of Campopleginae (Hymenoptera, Ichneumonidae) and 20 new species for Sweden. Entomologisk Tidskrift 2022; 143: 121–156.
  • Devides Castello, A.C.; De Souza Pereira, A.S.; Shimizu, G.H.; Rizzo Zuntini, A.; Olmos Simões, A.; Koch, I. Taxonomy and nomenclature of Aspidosperma (Apocynaceae). Phytotaxa 2022; 571 (3): 239–277. https://doi.org/10.11646/phytotaxa.571.3.1
  • Kerner, A. De Rat de Bibliothèque à pro de La Souris. In Paléontologie d’aujourd’hui; EDP Sciences, 2022; pp 122–123. https://doi.org/10.1051/978-2-7598-2718-3.c057.
  • Gourraud, A.; Vignes Lebbe, R.; Kerner, A.; Pignal, M. Architectural Pattern: Study of Orchid Architecture Using Tools to Take Quick Measurements of Virtual Specimens. BISS 2021, 5, e75752. https://doi.org/10.3897/biss.5.75752.
  • Saucède, T.; Eléaume, M.; Jossart, Q.; Moreau, C.; Downey, R.; Bax, N.; Sands, C.; Mercado, B.; Gallut, C.; Vignes-Lebbe, R. Taxonomy 2.0: Computer-Aided Identification Tools to Assist Antarctic Biologists in the FIeld and in the Laboratory. Antarctic Science 2021, 33 (1), 39–51. doi:10.1017/S0954102020000462.
  • Hays, L.-M.; Kerner, A. Virtual Systematics with Annotate: The Mexican Archaeocyaths Example. BISS 2020, 4, e59106. https://doi.org/10.3897/biss.4.59106
  • Bodin, S.; Scheel-Ybert, R.; Beauchene, J.; Molino J.F., Bremond, L.; CharKey: An electronic identification key for wood charcoals of French Guiana. IAWA Journal, Brill publishers 2019, 40, 1; pp.75-S20. https://doi.org/10.1163/22941932-40190227. ⟨hal-02098432⟩
  • Klimmek, F.; Baur, H. An interactive key to Central European species of the Pteromalus albipennis species group and other species of the genus (Hymenoptera: Chalcidoidea: Pteromalidae), with the description of a new species. Biodiversity Data Journal 2018; 6; e27722. https://doi.org/10.3897/BDJ.6.e27722
  • Dubuisson, J.Y.; Bouquin, S.; & Vignes Lebbe, R. Computer assisted identification: Xper and Orchids of France. L’Orchidophile; 2018; 219, 311-318.
  • Jouveau, S.; Delaunay, M.; Vignes Lebbe, R.; Nattier, R. A multi-access identification key based on colour patterns in ladybirds (Coleoptera, Coccinellidae). ZooKeys 2018; 758: 55-73. https://doi.org/10.3897/zookeys.758.22171
  • Saïd, A.; Hennequin, S.; Rouhan, G.; Dubuisson, J.Y. Disentangling the diversity and taxonomy of Hymenophyllaceae (Hymenophyllales, Polypodiidae) in the Comoros. European Journal of Taxonomy 2017; 313: 1‑53. https://doi.org/10.5852/ejt.2017.313
  • Engel, J.; Brousseau, L.; Baraloto, C. GuiaTreeKey, a multi-access electronic key to identify tree genera in French Guiana. PhytoKeys 2016; 68, 27-44. https://doi.org/10.3897/phytokeys.68.8707
  • Corvez, A.; Grand, A. Enabling comparisons of characters using an Xper2 based knowledge-base of fern morphology. Phytotaxa 2014; 183, 3, 145‑158. https://doi.org/10.11646/phytotaxa.183.3.2
  • Louveaux, A.; Amédégnato, C.; Poulain, S. & Desutter-Grandcolas, L. Catalogue and keys of the Acridomorpha (Insecta, Orthoptera) from north West Africa. Zoosystema 2013; 35, 2, 175-181. http://dx.doi.org/10.5252/z2013n2a3
  • Romain Thomas, « Anatomy of the endemic palms of the Near and Middle East: archaeobotanical perspectives », Revue d’ethnoécologie [En ligne], 4 | 2013, mis en ligne le 31 décembre 2013, consulté le 13 novembre 2018. URL : http://journals.openedition.org/ethnoecologie/1366 ; DOI:10.4000/ethnoecologie.1366
  • Kerner, A. Création et Analyse d’une Base de Connaissances Pour l’étude Des Archéocyathes, Muséum national d’Histoire naturelle, Paris, 2013.
  • Kerner A. Archaeocyatha, a computer-aided identification of genera. Geologica Belgica 2012; 15, 4, 209‑214.
  • Mathieu, B.; Cêtre-Sossah, C.; Garros, C.; Chavernac, D.; Balenghien, T.; Carpenter, S.; Setier-Rio, M.; Vignes Lebbe, R.; Ung, V.; Candolfi, E.; Delécolle, J. Development and validation of IIKC: an interactive identification key for Culicoides (Diptera: Ceratopogonidae) females from the Western Palaearctic region. Parasites & Vectors 2012; 5, 1, 137. https://doi.org/10.1186/1756-3305-5-137

The full list around Xper2 and Xper3

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